[server] API to fetch ML embeddings for given fileIDs (#1144)

## Description
- Also started storing the embedding size and version in the table. This
will come handy while comparing overall size when different compression
and serialization formats are used..
- Also, it can be used to smartly auto-download the embeddings or inform
the user about approximate size when they decide to enable indexing or
search on a particular client.

## Tests

 Verified that embedding fetch and store is working fine.
 Verified that embeddings/diff API is working fine.
This commit is contained in:
Neeraj Gupta 2024-03-19 12:23:24 +05:30 committed by GitHub
commit 449284a6a1
No known key found for this signature in database
GPG key ID: B5690EEEBB952194
8 changed files with 212 additions and 18 deletions

View file

@ -681,6 +681,7 @@ func main() {
privateAPI.PUT("/embeddings", embeddingHandler.InsertOrUpdate)
privateAPI.GET("/embeddings/diff", embeddingHandler.GetDiff)
privateAPI.POST("/embeddings/files", embeddingHandler.GetFilesEmbedding)
privateAPI.DELETE("/embeddings", embeddingHandler.DeleteAll)
offerHandler := &api.OfferHandler{Controller: offerController}

View file

@ -6,6 +6,7 @@ type Embedding struct {
EncryptedEmbedding string `json:"encryptedEmbedding"`
DecryptionHeader string `json:"decryptionHeader"`
UpdatedAt int64 `json:"updatedAt"`
Version *int `json:"version,omitempty"`
}
type InsertOrUpdateEmbeddingRequest struct {
@ -13,6 +14,7 @@ type InsertOrUpdateEmbeddingRequest struct {
Model string `json:"model" binding:"required"`
EncryptedEmbedding string `json:"encryptedEmbedding" binding:"required"`
DecryptionHeader string `json:"decryptionHeader" binding:"required"`
Version *int `json:"version,omitempty"`
}
type GetEmbeddingDiffRequest struct {
@ -22,11 +24,25 @@ type GetEmbeddingDiffRequest struct {
Limit int16 `form:"limit" binding:"required"`
}
type GetFilesEmbeddingRequest struct {
Model Model `form:"model" binding:"required"`
FileIDs []int64 `form:"fileIDs" binding:"required"`
}
type GetFilesEmbeddingResponse struct {
Embeddings []Embedding `json:"embeddings"`
NoDataFileIDs []int64 `json:"noDataFileIDs"`
ErrFileIDs []int64 `json:"errFileIDs"`
}
type Model string
const (
OnnxClip Model = "onnx-clip"
GgmlClip Model = "ggml-clip"
// FileMlClipFace is a model for face embeddings, it is used in request validation.
FileMlClipFace Model = "file-ml-clip-face"
)
type EmbeddingObject struct {

View file

@ -0,0 +1,3 @@
ALTER TABLE embeddings
DROP COLUMN IF EXISTS size,
DROP COLUMN IF EXISTS version;

View file

@ -0,0 +1,4 @@
ALTER TYPE model ADD VALUE IF NOT EXISTS 'file-ml-clip-face';
ALTER TABLE embeddings
ADD COLUMN size int DEFAULT NULL,
ADD COLUMN version int DEFAULT 1;

View file

@ -50,6 +50,22 @@ func (h *EmbeddingHandler) GetDiff(c *gin.Context) {
})
}
// GetFilesEmbedding returns the embeddings for the files
func (h *EmbeddingHandler) GetFilesEmbedding(c *gin.Context) {
var request ente.GetFilesEmbeddingRequest
if err := c.ShouldBindJSON(&request); err != nil {
handler.Error(c,
stacktrace.Propagate(ente.ErrBadRequest, fmt.Sprintf("Request binding failed %s", err)))
return
}
resp, err := h.Controller.GetFilesEmbedding(c, request)
if err != nil {
handler.Error(c, stacktrace.Propagate(err, ""))
return
}
c.JSON(http.StatusOK, resp)
}
// DeleteAll handler for deleting all embeddings for the user
func (h *EmbeddingHandler) DeleteAll(c *gin.Context) {
err := h.Controller.DeleteAll(c)

View file

@ -1,11 +1,12 @@
package embedding
import (
"bytes"
"encoding/json"
"errors"
"fmt"
"github.com/ente-io/museum/pkg/utils/array"
"strconv"
"strings"
"sync"
"github.com/aws/aws-sdk-go/aws"
@ -57,19 +58,24 @@ func (c *Controller) InsertOrUpdate(ctx *gin.Context, req ente.InsertOrUpdateEmb
if count < 1 {
return nil, stacktrace.Propagate(ente.ErrNotFound, "")
}
version := 1
if req.Version != nil {
version = *req.Version
}
obj := ente.EmbeddingObject{
Version: 1,
Version: version,
EncryptedEmbedding: req.EncryptedEmbedding,
DecryptionHeader: req.DecryptionHeader,
Client: network.GetPrettyUA(ctx.GetHeader("User-Agent")) + "/" + ctx.GetHeader("X-Client-Version"),
}
err = c.uploadObject(obj, c.getObjectKey(userID, req.FileID, req.Model))
if err != nil {
log.Error(err)
return nil, stacktrace.Propagate(err, "")
size, uploadErr := c.uploadObject(obj, c.getObjectKey(userID, req.FileID, req.Model))
if uploadErr != nil {
log.Error(uploadErr)
return nil, stacktrace.Propagate(uploadErr, "")
}
embedding, err := c.Repo.InsertOrUpdate(ctx, userID, req)
embedding, err := c.Repo.InsertOrUpdate(ctx, userID, req, size, version)
embedding.Version = &version
if err != nil {
return nil, stacktrace.Propagate(err, "")
}
@ -118,6 +124,54 @@ func (c *Controller) GetDiff(ctx *gin.Context, req ente.GetEmbeddingDiffRequest)
return embeddings, nil
}
func (c *Controller) GetFilesEmbedding(ctx *gin.Context, req ente.GetFilesEmbeddingRequest) (*ente.GetFilesEmbeddingResponse, error) {
userID := auth.GetUserID(ctx.Request.Header)
if err := c._validateGetFileEmbeddingsRequest(ctx, userID, req); err != nil {
return nil, stacktrace.Propagate(err, "")
}
userFileEmbeddings, err := c.Repo.GetFilesEmbedding(ctx, userID, req.Model, req.FileIDs)
if err != nil {
return nil, stacktrace.Propagate(err, "")
}
dbFileIds := make([]int64, 0)
for _, embedding := range userFileEmbeddings {
dbFileIds = append(dbFileIds, embedding.FileID)
}
missingFileIds := array.FindMissingElementsInSecondList(req.FileIDs, dbFileIds)
errFileIds := make([]int64, 0)
// Fetch missing userFileEmbeddings in parallel
embeddingObjects, err := c.getEmbeddingObjectsParallelV2(userID, userFileEmbeddings)
if err != nil {
return nil, stacktrace.Propagate(err, "")
}
fetchedEmbeddings := make([]ente.Embedding, 0)
// Populate missing data in userFileEmbeddings from fetched objects
for _, obj := range embeddingObjects {
if obj.err != nil {
errFileIds = append(errFileIds, obj.dbEmbeddingRow.FileID)
} else {
fetchedEmbeddings = append(fetchedEmbeddings, ente.Embedding{
FileID: obj.dbEmbeddingRow.FileID,
Model: obj.dbEmbeddingRow.Model,
EncryptedEmbedding: obj.embeddingObject.EncryptedEmbedding,
DecryptionHeader: obj.embeddingObject.DecryptionHeader,
UpdatedAt: obj.dbEmbeddingRow.UpdatedAt,
Version: obj.dbEmbeddingRow.Version,
})
}
}
return &ente.GetFilesEmbeddingResponse{
Embeddings: fetchedEmbeddings,
NoDataFileIDs: missingFileIds,
ErrFileIDs: errFileIds,
}, nil
}
func (c *Controller) DeleteAll(ctx *gin.Context) error {
userID := auth.GetUserID(ctx.Request.Header)
@ -202,21 +256,23 @@ func (c *Controller) getEmbeddingObjectPrefix(userID int64, fileID int64) string
return strconv.FormatInt(userID, 10) + "/ml-data/" + strconv.FormatInt(fileID, 10) + "/"
}
func (c *Controller) uploadObject(obj ente.EmbeddingObject, key string) error {
// uploadObject uploads the embedding object to the object store and returns the object size
func (c *Controller) uploadObject(obj ente.EmbeddingObject, key string) (int, error) {
embeddingObj, _ := json.Marshal(obj)
uploader := s3manager.NewUploaderWithClient(c.S3Config.GetHotS3Client())
up := s3manager.UploadInput{
Bucket: c.S3Config.GetHotBucket(),
Key: &key,
Body: strings.NewReader(string(embeddingObj)),
Body: bytes.NewReader(embeddingObj),
}
result, err := uploader.Upload(&up)
if err != nil {
log.Error(err)
return stacktrace.Propagate(err, "")
return -1, stacktrace.Propagate(err, "")
}
log.Infof("Uploaded to bucket %s", result.Location)
return nil
return len(embeddingObj), nil
}
var globalFetchSemaphore = make(chan struct{}, 300)
@ -253,6 +309,44 @@ func (c *Controller) getEmbeddingObjectsParallel(objectKeys []string) ([]ente.Em
return embeddingObjects, nil
}
type embeddingObjectResult struct {
embeddingObject ente.EmbeddingObject
dbEmbeddingRow ente.Embedding
err error
}
func (c *Controller) getEmbeddingObjectsParallelV2(userID int64, dbEmbeddingRows []ente.Embedding) ([]embeddingObjectResult, error) {
var wg sync.WaitGroup
embeddingObjects := make([]embeddingObjectResult, len(dbEmbeddingRows))
downloader := s3manager.NewDownloaderWithClient(c.S3Config.GetHotS3Client())
for i, dbEmbeddingRow := range dbEmbeddingRows {
wg.Add(1)
globalFetchSemaphore <- struct{}{} // Acquire from global semaphore
go func(i int, dbEmbeddingRow ente.Embedding) {
defer wg.Done()
defer func() { <-globalFetchSemaphore }() // Release back to global semaphore
objectKey := c.getObjectKey(userID, dbEmbeddingRow.FileID, dbEmbeddingRow.Model)
obj, err := c.getEmbeddingObject(objectKey, downloader)
if err != nil {
log.Error("error fetching embedding object: "+objectKey, err)
embeddingObjects[i] = embeddingObjectResult{
err: err,
dbEmbeddingRow: dbEmbeddingRow,
}
} else {
embeddingObjects[i] = embeddingObjectResult{
embeddingObject: obj,
dbEmbeddingRow: dbEmbeddingRow,
}
}
}(i, dbEmbeddingRow)
}
wg.Wait()
return embeddingObjects, nil
}
func (c *Controller) getEmbeddingObject(objectKey string, downloader *s3manager.Downloader) (ente.EmbeddingObject, error) {
var obj ente.EmbeddingObject
buff := &aws.WriteAtBuffer{}
@ -271,3 +365,22 @@ func (c *Controller) getEmbeddingObject(objectKey string, downloader *s3manager.
}
return obj, nil
}
func (c *Controller) _validateGetFileEmbeddingsRequest(ctx *gin.Context, userID int64, req ente.GetFilesEmbeddingRequest) error {
if req.Model == "" {
return ente.NewBadRequestWithMessage("model is required")
}
if len(req.FileIDs) == 0 {
return ente.NewBadRequestWithMessage("fileIDs are required")
}
if len(req.FileIDs) > 100 {
return ente.NewBadRequestWithMessage("fileIDs should be less than or equal to 100")
}
if err := c.AccessCtrl.VerifyFileOwnership(ctx, &access.VerifyFileOwnershipParams{
ActorUserId: userID,
FileIDs: req.FileIDs,
}); err != nil {
return stacktrace.Propagate(err, "User does not own some file(s)")
}
return nil
}

View file

@ -4,6 +4,7 @@ import (
"context"
"database/sql"
"fmt"
"github.com/lib/pq"
"github.com/ente-io/museum/ente"
"github.com/ente-io/stacktrace"
@ -18,14 +19,14 @@ type Repository struct {
// Create inserts a new embedding
func (r *Repository) InsertOrUpdate(ctx context.Context, ownerID int64, entry ente.InsertOrUpdateEmbeddingRequest) (ente.Embedding, error) {
func (r *Repository) InsertOrUpdate(ctx context.Context, ownerID int64, entry ente.InsertOrUpdateEmbeddingRequest, size int, version int) (ente.Embedding, error) {
var updatedAt int64
err := r.DB.QueryRowContext(ctx, `INSERT INTO embeddings
(file_id, owner_id, model)
VALUES ($1, $2, $3)
(file_id, owner_id, model, size, version)
VALUES ($1, $2, $3, $4, $5)
ON CONFLICT ON CONSTRAINT unique_embeddings_file_id_model
DO UPDATE SET updated_at = now_utc_micro_seconds()
RETURNING updated_at`, entry.FileID, ownerID, entry.Model).Scan(&updatedAt)
DO UPDATE SET updated_at = now_utc_micro_seconds(), size = $4, version = $5
RETURNING updated_at`, entry.FileID, ownerID, entry.Model, size, version).Scan(&updatedAt)
if err != nil {
// check if error is due to model enum invalid value
if err.Error() == fmt.Sprintf("pq: invalid input value for enum model: \"%s\"", entry.Model) {
@ -44,7 +45,7 @@ func (r *Repository) InsertOrUpdate(ctx context.Context, ownerID int64, entry en
// GetDiff returns the embeddings that have been updated since the given time
func (r *Repository) GetDiff(ctx context.Context, ownerID int64, model ente.Model, sinceTime int64, limit int16) ([]ente.Embedding, error) {
rows, err := r.DB.QueryContext(ctx, `SELECT file_id, model, encrypted_embedding, decryption_header, updated_at
rows, err := r.DB.QueryContext(ctx, `SELECT file_id, model, encrypted_embedding, decryption_header, updated_at, version
FROM embeddings
WHERE owner_id = $1 AND model = $2 AND updated_at > $3
ORDER BY updated_at ASC
@ -55,6 +56,16 @@ func (r *Repository) GetDiff(ctx context.Context, ownerID int64, model ente.Mode
return convertRowsToEmbeddings(rows)
}
func (r *Repository) GetFilesEmbedding(ctx context.Context, ownerID int64, model ente.Model, fileIDs []int64) ([]ente.Embedding, error) {
rows, err := r.DB.QueryContext(ctx, `SELECT file_id, model, encrypted_embedding, decryption_header, updated_at, version
FROM embeddings
WHERE owner_id = $1 AND model = $2 AND file_id = ANY($3)`, ownerID, model, pq.Array(fileIDs))
if err != nil {
return nil, stacktrace.Propagate(err, "")
}
return convertRowsToEmbeddings(rows)
}
func (r *Repository) DeleteAll(ctx context.Context, ownerID int64) error {
_, err := r.DB.ExecContext(ctx, "DELETE FROM embeddings WHERE owner_id = $1", ownerID)
if err != nil {
@ -82,13 +93,19 @@ func convertRowsToEmbeddings(rows *sql.Rows) ([]ente.Embedding, error) {
for rows.Next() {
embedding := ente.Embedding{}
var encryptedEmbedding, decryptionHeader sql.NullString
err := rows.Scan(&embedding.FileID, &embedding.Model, &encryptedEmbedding, &decryptionHeader, &embedding.UpdatedAt)
var version sql.NullInt32
err := rows.Scan(&embedding.FileID, &embedding.Model, &encryptedEmbedding, &decryptionHeader, &embedding.UpdatedAt, &version)
if encryptedEmbedding.Valid && len(encryptedEmbedding.String) > 0 {
embedding.EncryptedEmbedding = encryptedEmbedding.String
}
if decryptionHeader.Valid && len(decryptionHeader.String) > 0 {
embedding.DecryptionHeader = decryptionHeader.String
}
v := 1
if version.Valid {
v = int(version.Int32)
}
embedding.Version = &v
if err != nil {
return nil, stacktrace.Propagate(err, "")
}

View file

@ -47,3 +47,27 @@ func Int64InList(a int64, list []int64) bool {
}
return false
}
// FindMissingElementsInSecondList identifies elements in 'sourceList' that are not present in 'targetList'.
// Returns:
// - A slice of int64 representing the elements found in 'sourceList' but not in 'targetList'.
// If all elements of 'sourceList' are present in 'targetList', an empty slice is returned.
//
// Example usage:
// missingElements := FindMissingElementsInSecondList([]int64{1, 2, 3, 4}, []int64{2, 4, 6})
// fmt.Println(missingElements) // Output: [1, 3]
func FindMissingElementsInSecondList(sourceList []int64, targetList []int64) []int64 {
targetSet := make(map[int64]struct{})
for _, item := range targetList {
targetSet[item] = struct{}{}
}
var missingElements = make([]int64, 0)
for _, item := range sourceList {
if _, found := targetSet[item]; !found {
missingElements = append(missingElements, item)
}
}
return missingElements
}